STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycfNPhosphotransferase system PTS; COG0510 Thiamine kinase and related kinases [Coenzyme transport and metabolism]; lichenan-specific IIa component. (249 aa)    
Predicted Functional Partners:
BAP39375.1
Hypothetical protein; COG0510 Thiamine kinase and related kinases [Coenzyme transport and metabolism].
 
 
  
0.831
BAP39621.1
COG3601 predicted membrane protein [Function unknown]; predicted transmembrane protein; putative carbohydrate kinase.
  
     0.764
BAP39410.1
Predicted transmembrane protein.
 
     0.763
BAP39414.1
Predicted transmembrane protein.
 
     0.757
BAP39780.1
Hypothetical protein; Pfam00231; ATP-synt, ATP synthase.
 
     0.755
yqaJ
Hypothetical protein; Pfam09588 YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.
  
     0.727
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.718
BAP39374.1
Predicted transmembrane protein.
       0.701
BAP39795.1
Predicted transmembrane protein.
  
    0.682
oppA
Oligopeptide ABC transporter substrate-binding protein; COG4166 ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism].
  
    0.679
Your Current Organism:
Mycoplasma canadense
NCBI taxonomy Id: 29554
Other names: ATCC 29418, M. canadense, Metamycoplasma canadense, NCTC 10152, strain 275C
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