STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolECOG4591 ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]. (2784 aa)    
Predicted Functional Partners:
salX
ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].
 
 
 0.999
BAP39410.1
Predicted transmembrane protein.
 
   
 0.802
BAP39414.1
Predicted transmembrane protein.
 
   
 0.788
BAP39771.1
Hypothetical protein.
 
    0.782
secDF
Protein-export membrane protein; PRK13024 bifunctional preprotein translocase subunit SecD/SecF.
 
  
 0.779
BAP39649.1
Pfam03202 Lipoprotein_10, putative mycoplasma lipoprotein, C-terminal region; pfam03305 Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of the aligned regions in this family are found towards the middle of the member proteins.; predicted lipoprotein.
 
     0.776
BAP39375.1
Hypothetical protein; COG0510 Thiamine kinase and related kinases [Coenzyme transport and metabolism].
  
     0.775
BAP39517.1
Membrane protein P80.
  
     0.775
BAP39543.1
Hypothetical protein; COG1284 Uncharacterized conserved protein [Function unknown]; putative transmembrane protein.
 
     0.775
norM
Hypothetical protein; COG0534 Na+-driven multidrug efflux pump [Defense mechanisms]; predicted transmembrane protein, putative MatE family efflux protein.
 
     0.774
Your Current Organism:
Mycoplasma canadense
NCBI taxonomy Id: 29554
Other names: ATCC 29418, M. canadense, Metamycoplasma canadense, NCTC 10152, strain 275C
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