STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tktACOG0021 Transketolase [Carbohydrate transport and metabolism]; COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]. (620 aa)    
Predicted Functional Partners:
rpe
COG0036 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].
  
 0.967
pgi
COG0166 Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]; GPI.
 
 0.967
fba
COG0191 Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism].
  
 
 0.959
prsA
Ribose-phosphate pyrophosphokinase; COG2826 Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; transposase.
   
 
 0.953
rpiB
COG0698 Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism].
  
 
 0.952
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
  
 0.931
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
 0.923
xfp
COG3957 Phosphoketolase [Carbohydrate transport and metabolism].
  
 
 0.915
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
   
 
 0.909
pykF
COG0469 Pyruvate kinase [Carbohydrate transport and metabolism]; Belongs to the pyruvate kinase family.
  
 0.908
Your Current Organism:
Mycoplasma canadense
NCBI taxonomy Id: 29554
Other names: ATCC 29418, M. canadense, Metamycoplasma canadense, NCTC 10152, strain 275C
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