STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cof-3Hypothetical protein, putative COF family HAD hydrolase; COG0560 Phosphoserine phosphatase [Amino acid transport and metabolism]; COG0561 predicted hydrolases of the HAD superfamily [General function prediction only]; COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]. (318 aa)    
Predicted Functional Partners:
rnhC
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
  
 0.825
yqaJ
Hypothetical protein; Pfam09588 YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.
  
    0.623
ycfN
Phosphotransferase system PTS; COG0510 Thiamine kinase and related kinases [Coenzyme transport and metabolism]; lichenan-specific IIa component.
 
     0.610
cof
Hypothetical protein; COG0561predicted hydrolases of the HAD superfamily [General function prediction only]; putative COF family HAD hydrolase.
  
     0.500
upp
Uracil phosphoribosyl transferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.499
deoC-2
COG0274 Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]; COG0502 Biotin synthase and related enzymes [Coenzyme metabolism].
       0.427
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
     
 0.425
Your Current Organism:
Mycoplasma canadense
NCBI taxonomy Id: 29554
Other names: ATCC 29418, M. canadense, Metamycoplasma canadense, NCTC 10152, strain 275C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.