STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP39668.1Hypothetical protein; TIGR02005 PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]; putative glucose/sucrose specific PTS system IIB component. (120 aa)    
Predicted Functional Partners:
BAP39669.1
ATP-binding protein; COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].
  
    0.827
BAP39670.1
Predicted transmembrane protein.
       0.777
thrS
COG0441 Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; threonine-tRNA ligase, ThrRS; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.544
sps1
COG0515 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms.
   
 
 0.542
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.539
amyA
Glucan 1,6-alpha-glucosidase; COG0366 Glycosidases [Carbohydrate transport and metabolism].
  
  
 0.428
Your Current Organism:
Mycoplasma canadense
NCBI taxonomy Id: 29554
Other names: ATCC 29418, M. canadense, Metamycoplasma canadense, NCTC 10152, strain 275C
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