STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cddCOG0295 Cytidine deaminase [Nucleotide transport and metabolism]. (133 aa)    
Predicted Functional Partners:
deoA
COG0213 Thymidine phosphorylase [Nucleotide transport and metabolism].
  
 
 0.947
deoD
COG0813 Purine-nucleoside phosphorylase [Nucleotide transport and metabolism].
  
 
 0.946
era
GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.736
hipB
Hypothetical protein; COG1396 predicted transcriptional regulators [Transcription].
       0.718
glyS
COG0423 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
  
    0.477
Your Current Organism:
Mycoplasma canadense
NCBI taxonomy Id: 29554
Other names: ATCC 29418, M. canadense, Metamycoplasma canadense, NCTC 10152, strain 275C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.