Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKA50029.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (799 aa)    
Predicted Functional Partners:
folT
In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.761
gsiD_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.671
AKA49760.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.671
yejE
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.671
gsiD_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.671
oppB_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.655
AKA49761.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.655
oppB_3
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.655
oppB_2
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.655
AKA50027.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.525
Your Current Organism:
Mycoplasma gallinaceum
NCBI taxonomy Id: 29556
Other names: ATCC 33550, M. gallinaceum, NCTC 10183, strain DD
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