Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
oppB-2Oligopeptide transport system permease protein OppB. (362 aa)    
Predicted Functional Partners:
oppA
Oligopeptide ABC transporter, periplasmicoligopeptide-binding protein OppA.
 
 0.997
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 0.992
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 0.991
oppC
Oligopeptide transport system permease protein OppC.
 
 0.986
OAB49205.1
Oligopeptide transport system; Belongs to the ABC transporter superfamily.
 0.977
OAB48984.1
Oligopeptide transport system permease protein OppC.
  
  0.950
OAB49204.1
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.949
oppB
Oligopeptide transport system permease protein OppB.
 
  
 
0.905
OAB48985.1
Oligopeptide transport system permease protein OppB.
     
  0.867
OAB49060.1
Hypothetical protein.
  
  0.859
Your Current Organism:
Mycoplasma gallinarum
NCBI taxonomy Id: 29557
Other names: ATCC 19708, Asterococcus gallinarum, Borrelomyces gallinarum, DSM 19816, IFO 14859, M. gallinarum, NBRC 14859, NCTC 10120, strain PG16
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