Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ldhL-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (323 aa)    
Predicted Functional Partners:
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.980
pdhB
Pyruvate dehydrogenase E1 component beta subunit.
  
 0.940
OAB48658.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.938
pgiB
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.920
tkt
Transketolase; Belongs to the transketolase family.
  
 0.918
OAB48844.1
Hypothetical protein.
  
 0.916
fba
Fructose-bisphosphate aldolase class II.
  
 
 0.910
pdhA
Pyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
  
 
 0.905
OAB48925.1
Hypothetical protein.
  
 0.891
OAB49162.1
Xylulose-5-phosphate phosphoketolase.
    
 0.877
Your Current Organism:
Mycoplasma gallinarum
NCBI taxonomy Id: 29557
Other names: ATCC 19708, Asterococcus gallinarum, Borrelomyces gallinarum, DSM 19816, IFO 14859, M. gallinarum, NBRC 14859, NCTC 10120, strain PG16
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