STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL60006.1Hypothetical protein. (915 aa)    
Predicted Functional Partners:
SFL60030.1
Sigma E regulatory protein, MucB/RseB.
  
 0.970
SFL60060.1
Hypothetical protein.
 
   
 0.881
SFL59971.1
DNA-binding transcriptional regulator, MarR family.
 
     0.782
SFL14917.1
Biopolymer transport protein ExbD.
  
     0.535
SFM12138.1
Methyl-accepting chemotaxis protein.
  
     0.486
SFM15644.1
Multiple sugar transport system substrate-binding protein.
  
     0.480
SFL34096.1
tRNA A-37 threonylcarbamoyl transferase component Bud32.
  
     0.473
SFL60272.1
C-terminal binding-module, SLH-like, of glucodextranase.
 
     0.461
SFL12717.1
Outer membrane transport energization protein ExbD (TC 2.C.1.1.1).
  
     0.426
SFL59938.1
Transposase DDE domain-containing protein.
       0.420
Your Current Organism:
Halanaerobium salsuginis
NCBI taxonomy Id: 29563
Other names: ATCC 51327, H. salsuginis, Haloanaerobium salsuginis, Haloanaerobium salsugo, strain VS-752
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.