Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL90027.1 | groL | SAMN05878437_0159 | SAMN05878437_0160 | Transposase, IS4 family. | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.496 |
SHL90027.1 | trmJ | SAMN05878437_0159 | SAMN05878437_0158 | Transposase, IS4 family. | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.584 |
SHL90080.1 | groL | SAMN05878437_0162 | SAMN05878437_0160 | UPF0716 protein FxsA. | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.472 |
SHL90080.1 | groS | SAMN05878437_0162 | SAMN05878437_0161 | UPF0716 protein FxsA. | Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.581 |
SHL90080.1 | trmJ | SAMN05878437_0162 | SAMN05878437_0158 | UPF0716 protein FxsA. | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.547 |
SHM11152.1 | trmJ | SAMN05878437_1271 | SAMN05878437_0158 | Lipopolysaccharide export system permease protein. | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.460 |
cysS | trmJ | SAMN05878437_0418 | SAMN05878437_0158 | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.425 |
groL | SHL90027.1 | SAMN05878437_0160 | SAMN05878437_0159 | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | Transposase, IS4 family. | 0.496 |
groL | SHL90080.1 | SAMN05878437_0160 | SAMN05878437_0162 | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | UPF0716 protein FxsA. | 0.472 |
groL | groS | SAMN05878437_0160 | SAMN05878437_0161 | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.999 |
groL | trmJ | SAMN05878437_0160 | SAMN05878437_0158 | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.678 |
groS | SHL90080.1 | SAMN05878437_0161 | SAMN05878437_0162 | Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | UPF0716 protein FxsA. | 0.581 |
groS | groL | SAMN05878437_0161 | SAMN05878437_0160 | Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.999 |
groS | trmJ | SAMN05878437_0161 | SAMN05878437_0158 | Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.643 |
rlmE | trmJ | SAMN05878437_1502 | SAMN05878437_0158 | 23S rRNA Um-2552 2'-O-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.619 |
rnhB | trmJ | SAMN05878437_1299 | SAMN05878437_0158 | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.423 |
trmJ | SHL90027.1 | SAMN05878437_0158 | SAMN05878437_0159 | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | Transposase, IS4 family. | 0.584 |
trmJ | SHL90080.1 | SAMN05878437_0158 | SAMN05878437_0162 | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | UPF0716 protein FxsA. | 0.547 |
trmJ | SHM11152.1 | SAMN05878437_0158 | SAMN05878437_1271 | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | Lipopolysaccharide export system permease protein. | 0.460 |
trmJ | cysS | SAMN05878437_0158 | SAMN05878437_0418 | tRNA (cytidine32/uridine32-2'-O)-methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.425 |
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