STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL94047.1Transposase DDE domain group 1. (459 aa)    
Predicted Functional Partners:
SHM00107.1
Transposase DDE domain group 1; Manually curated.
  
     0.768
SHL91965.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.548
SHM13221.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.504
SHL94063.1
Integrase core domain-containing protein.
 
     0.466
SHL91940.1
Hypothetical protein.
  
     0.462
SHM13241.1
Hypothetical protein.
  
     0.462
Your Current Organism:
Halomonas subglaciescola
NCBI taxonomy Id: 29571
Other names: ACAM 12, ATCC 43668, CIP 104042, DSM 4683, H. subglaciescola, IFO 14766, JCM 21045, LMG 8824, LMG:8824, NBRC 14766, UQM 2926
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.