STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM03434.1Transposase DDE domain group 1. (623 aa)    
Predicted Functional Partners:
SHM00107.1
Transposase DDE domain group 1; Manually curated.
  
     0.767
SHL91965.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.554
SHM03418.1
Transposase DDE domain group 1.
 
    
0.542
SHM13221.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.511
SHL91940.1
Hypothetical protein.
  
     0.468
SHM13241.1
Hypothetical protein.
  
     0.468
SHL92115.1
Transposase.
  
     0.404
Your Current Organism:
Halomonas subglaciescola
NCBI taxonomy Id: 29571
Other names: ACAM 12, ATCC 43668, CIP 104042, DSM 4683, H. subglaciescola, IFO 14766, JCM 21045, LMG 8824, LMG:8824, NBRC 14766, UQM 2926
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.