STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM09174.1Protein of unknown function. (129 aa)    
Predicted Functional Partners:
SHM09131.1
DNA polymerase-3 subunit epsilon.
 
     0.743
SHM09194.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.743
SHM09153.1
CBS domain-containing protein.
 
     0.731
SHM20470.1
Small conductance mechanosensitive channel.
  
     0.660
SHL97857.1
Protein of unknown function.
  
     0.615
SHL93196.1
Autotransporter secretion inner membrane protein TamB.
  
     0.605
SHM05350.1
Hypothetical protein.
  
     0.533
SHM43265.1
Hypothetical protein.
  
     0.532
SHL88945.1
DedD protein.
  
     0.518
kdkA
3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
  
     0.478
Your Current Organism:
Halomonas subglaciescola
NCBI taxonomy Id: 29571
Other names: ACAM 12, ATCC 43668, CIP 104042, DSM 4683, H. subglaciescola, IFO 14766, JCM 21045, LMG 8824, LMG:8824, NBRC 14766, UQM 2926
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.