Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL99433.1 | SHM09704.1 | SAMN05878437_0677 | SAMN05878437_1200 | N-acetylmuramoyl-L-alanine amidase. | Lipoprotein NlpD. | 0.789 |
SHL99433.1 | SHM37141.1 | SAMN05878437_0677 | SAMN05878437_2628 | N-acetylmuramoyl-L-alanine amidase. | Murein DD-endopeptidase. | 0.766 |
SHL99433.1 | surE | SAMN05878437_0677 | SAMN05878437_1203 | N-acetylmuramoyl-L-alanine amidase. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.420 |
SHM09704.1 | SHL99433.1 | SAMN05878437_1200 | SAMN05878437_0677 | Lipoprotein NlpD. | N-acetylmuramoyl-L-alanine amidase. | 0.789 |
SHM09704.1 | SHM09721.1 | SAMN05878437_1200 | SAMN05878437_1201 | Lipoprotein NlpD. | Putative membrane protein. | 0.873 |
SHM09704.1 | SHM37141.1 | SAMN05878437_1200 | SAMN05878437_2628 | Lipoprotein NlpD. | Murein DD-endopeptidase. | 0.789 |
SHM09704.1 | ftsB | SAMN05878437_1200 | SAMN05878437_1207 | Lipoprotein NlpD. | Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | 0.790 |
SHM09704.1 | ispD | SAMN05878437_1200 | SAMN05878437_1206 | Lipoprotein NlpD. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). | 0.753 |
SHM09704.1 | ispF | SAMN05878437_1200 | SAMN05878437_1205 | Lipoprotein NlpD. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.821 |
SHM09704.1 | pcm | SAMN05878437_1200 | SAMN05878437_1202 | Lipoprotein NlpD. | protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.890 |
SHM09704.1 | rpoS | SAMN05878437_1200 | SAMN05878437_1199 | Lipoprotein NlpD. | RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.806 |
SHM09704.1 | surE | SAMN05878437_1200 | SAMN05878437_1203 | Lipoprotein NlpD. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.920 |
SHM09704.1 | truD | SAMN05878437_1200 | SAMN05878437_1204 | Lipoprotein NlpD. | tRNA pseudouridine13 synthase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.821 |
SHM09721.1 | SHM09704.1 | SAMN05878437_1201 | SAMN05878437_1200 | Putative membrane protein. | Lipoprotein NlpD. | 0.873 |
SHM09721.1 | ftsB | SAMN05878437_1201 | SAMN05878437_1207 | Putative membrane protein. | Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | 0.753 |
SHM09721.1 | ispD | SAMN05878437_1201 | SAMN05878437_1206 | Putative membrane protein. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). | 0.753 |
SHM09721.1 | ispF | SAMN05878437_1201 | SAMN05878437_1205 | Putative membrane protein. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.821 |
SHM09721.1 | pcm | SAMN05878437_1201 | SAMN05878437_1202 | Putative membrane protein. | protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.873 |
SHM09721.1 | rpoS | SAMN05878437_1201 | SAMN05878437_1199 | Putative membrane protein. | RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.720 |
SHM09721.1 | surE | SAMN05878437_1201 | SAMN05878437_1203 | Putative membrane protein. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.873 |
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