STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM18346.1Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. (473 aa)    
Predicted Functional Partners:
SHM18323.1
Transcriptional regulator, MerR family.
 
  
 0.951
SHM18406.1
Predicted NAD/FAD-binding protein.
 
   
 0.891
SHM18447.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.853
SHM18361.1
SnoaL-like domain-containing protein.
 
     0.851
SHM18422.1
Hypothetical protein.
 
     0.850
SHM18391.1
Short-chain dehydrogenase.
 
     0.800
SHM18459.1
Protein of unknown function.
       0.768
SHM18306.1
Hypothetical protein.
 
     0.751
SHL97151.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.712
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
    
   0.680
Your Current Organism:
Halomonas subglaciescola
NCBI taxonomy Id: 29571
Other names: ACAM 12, ATCC 43668, CIP 104042, DSM 4683, H. subglaciescola, IFO 14766, JCM 21045, LMG 8824, LMG:8824, NBRC 14766, UQM 2926
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.