Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SHM18459.1Protein of unknown function. (172 aa)    
Predicted Functional Partners:
SHM18391.1
Short-chain dehydrogenase.
 
     0.931
SHM18422.1
Hypothetical protein.
 
     0.926
SHM18447.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.918
SHM18406.1
Predicted NAD/FAD-binding protein.
 
     0.906
SHM35385.1
Glutamate synthase (NADPH) large subunit.
     
  0.893
SHM18361.1
SnoaL-like domain-containing protein.
 
     0.882
SHM18346.1
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
       0.735
SHL87361.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.682
SHM43908.1
L-proline dehydrogenase.
   
 
  0.682
SHM18323.1
Transcriptional regulator, MerR family.
     
 0.673
Your Current Organism:
Halomonas subglaciescola
NCBI taxonomy Id: 29571
Other names: ACAM 12, ATCC 43668, CIP 104042, DSM 4683, H. subglaciescola, IFO 14766, JCM 21045, LMG 8824, LMG:8824, NBRC 14766, UQM 2926
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