STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM18459.1Protein of unknown function. (172 aa)    
Predicted Functional Partners:
SHM18391.1
Short-chain dehydrogenase.
 
     0.941
SHM18422.1
Hypothetical protein.
 
     0.936
SHM18447.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.929
SHM18406.1
Predicted NAD/FAD-binding protein.
 
     0.919
SHM18361.1
SnoaL-like domain-containing protein.
 
     0.897
SHM18346.1
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
       0.768
SHL87361.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.739
SHM43908.1
L-proline dehydrogenase.
   
 
  0.739
SHM18323.1
Transcriptional regulator, MerR family.
       0.719
SHM23228.1
Hypothetical protein.
 
     0.508
Your Current Organism:
Halomonas subglaciescola
NCBI taxonomy Id: 29571
Other names: ACAM 12, ATCC 43668, CIP 104042, DSM 4683, H. subglaciescola, IFO 14766, JCM 21045, LMG 8824, LMG:8824, NBRC 14766, UQM 2926
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