STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM19024.1Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. (459 aa)    
Predicted Functional Partners:
SHM18999.1
Alcohol dehydrogenase, class IV.
 0.972
SHM19035.1
Glutamine synthetase.
 
 
  0.964
SHM03538.1
Acyl transferase domain-containing protein.
  
 0.929
SHM19061.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
     0.877
SHM35385.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.873
SHM19097.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
   
 0.863
SHM19120.1
Predicted N-formylglutamate amidohydrolase.
 
   
 0.820
SHM19143.1
Transcriptional regulator, RpiR family.
 
 
  0.819
SHM19082.1
TRAP transporter, DctM subunit.
 
   
 0.798
SHM42241.1
2-methylcitrate synthase; Belongs to the citrate synthase family.
   
  0.757
Your Current Organism:
Halomonas subglaciescola
NCBI taxonomy Id: 29571
Other names: ACAM 12, ATCC 43668, CIP 104042, DSM 4683, H. subglaciescola, IFO 14766, JCM 21045, LMG 8824, LMG:8824, NBRC 14766, UQM 2926
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