STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM19267.1Asp/Glu/hydantoin racemase. (251 aa)    
Predicted Functional Partners:
SHM33615.1
Putative urate catabolism protein.
 
  
  0.981
SHM33553.1
OHCU decarboxylase.
    
  0.930
SHM19183.1
Dihydropyrimidinase.
 
  
  0.804
SHM28269.1
Asp/Glu/hydantoin racemase.
  
  
 
0.754
SHM19308.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.690
SHM19334.1
Tripartite ATP-independent transporter solute receptor, DctP family.
       0.690
SHM19254.1
CubicO group peptidase, beta-lactamase class C family.
       0.686
SHM19290.1
TRAP transporter, DctM subunit.
       0.652
SHM19222.1
Transcriptional regulator, GntR family.
 
     0.628
SHM19208.1
Hypothetical protein.
 
     0.561
Your Current Organism:
Halomonas subglaciescola
NCBI taxonomy Id: 29571
Other names: ACAM 12, ATCC 43668, CIP 104042, DSM 4683, H. subglaciescola, IFO 14766, JCM 21045, LMG 8824, LMG:8824, NBRC 14766, UQM 2926
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