STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM20832.1Transcriptional regulator, GntR family. (250 aa)    
Predicted Functional Partners:
SHM20746.1
Carbon-phosphorous lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
  
 0.985
SHM20813.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG.
 
  
 0.985
SHM20784.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH.
 
  
 0.980
SHM20775.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI.
 
  
 0.979
SHM20722.1
Putative phosphonate transport system ATP-binding protein.
 
  
 0.967
SHM20684.1
Ribophosphonate triphosphate hydrolase.
 
  
 0.965
SHM20708.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL.
 
  
 0.964
SHM20872.1
Phosphonate transport system substrate-binding protein.
 
  
 0.946
phnN
Ribose 1,5-bisphosphokinase; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
 
  
 0.941
phnC
Phosphonate transport system ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
  
 0.854
Your Current Organism:
Halomonas subglaciescola
NCBI taxonomy Id: 29571
Other names: ACAM 12, ATCC 43668, CIP 104042, DSM 4683, H. subglaciescola, IFO 14766, JCM 21045, LMG 8824, LMG:8824, NBRC 14766, UQM 2926
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