Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARQ72787.1PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)    
Predicted Functional Partners:
ARQ72786.1
Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.989
ARQ73781.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.787
B6D87_10390
Two-component sensor histidine kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.763
ARQ76377.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.761
ARQ74761.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.757
ARQ76814.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.726
ARQ75423.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.707
ARQ75833.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.698
ARQ74303.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.662
ARQ73012.1
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.659
Your Current Organism:
Pseudomonas fragi
NCBI taxonomy Id: 296
Other names: ATCC 4973, Bacterium fragi, CCUG 556, CFBP 4556, CIP 55.4, DSM 3456, HAMBI 28, IFO 3458, LMG 2191, LMG:2191, NBRC 3458, NCCB 69033, NCIB 8542, NCIB:8542, NCTC 10689, NRRL B-25, NRRL B-727, NRRL:B:25, P. fragi, Pseudomonas fragariae, VKM B-898, VKM:B:898
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