tauB-2 protein (Pseudomonas fragi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tauB-2

Nitrate ABC transporter ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family. (278 aa)

Predicted Functional Partners:

ARQ73520.1

0.998

tauA-2

0.996

tauA

0.993

tauA-3

0.993

ARQ72724.1

0.992

ARQ72725.1

0.947

ARQ76299.1

0.919

tauB

0.904

ARQ74586.1

0.888

ARQ76305.1

0.871

Your Current Organism:

Pseudomonas fragi

NCBI taxonomy Id: 296
Other names: ATCC 4973, Bacterium fragi, CCUG 556, CFBP 4556, CIP 55.4, DSM 3456, HAMBI 28, IFO 3458, LMG 2191, LMG:2191, NBRC 3458, NCCB 69033, NCIB 8542, NCIB:8542, NCTC 10689, NRRL B-25, NRRL B-727, NRRL:B:25, P. fragi, Pseudomonas fragariae, VKM B-898, VKM:B:898

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARQ72724.1	ARQ72725.1	B6D87_00200	B6D87_00205	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ARQ72724.1	ARQ73520.1	B6D87_00200	B6D87_04580	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ARQ72724.1	tauA	B6D87_00200	B6D87_00190	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ARQ72724.1	tauA-2	B6D87_00200	B6D87_04590	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ARQ72724.1	tauA-3	B6D87_00200	B6D87_10420	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ARQ72724.1	tauB	B6D87_00200	B6D87_00195	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine transporter ATP-binding subunit; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.	0.998
ARQ72724.1	tauB-2	B6D87_00200	B6D87_04585	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.	0.992
ARQ72725.1	ARQ72724.1	B6D87_00205	B6D87_00200	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ARQ72725.1	ARQ73520.1	B6D87_00205	B6D87_04580	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
ARQ72725.1	ARQ76299.1	B6D87_00205	B6D87_19725	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
ARQ72725.1	tauA	B6D87_00205	B6D87_00190	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ARQ72725.1	tauA-2	B6D87_00205	B6D87_04590	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
ARQ72725.1	tauA-3	B6D87_00205	B6D87_10420	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
ARQ72725.1	tauB	B6D87_00205	B6D87_00195	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine transporter ATP-binding subunit; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.	0.982
ARQ72725.1	tauB-2	B6D87_00205	B6D87_04585	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.	0.947
ARQ73520.1	ARQ72724.1	B6D87_04580	B6D87_00200	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ARQ73520.1	ARQ72725.1	B6D87_04580	B6D87_00205	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
ARQ73520.1	tauA	B6D87_04580	B6D87_00190	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ARQ73520.1	tauA-2	B6D87_04580	B6D87_04590	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ARQ73520.1	tauA-3	B6D87_04580	B6D87_10420	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992

page 1 of 5

Server load: medium (62%) [HD]

Permalink

Network

Neighborhood

Databases

Co-occurrence

Textmining

Co-expression

Experiments

Fusion

© STRING Consortium 2026

Credits

Access

Info

About