STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B6D87_113602-ketogluconate transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (257 aa)    
Predicted Functional Partners:
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 
 0.655
ARQ74678.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
ARQ73130.1
Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.561
ARQ74129.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.537
ARQ75697.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.537
ARQ75932.1
Cold shock domain protein CspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.537
ARQ76964.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.505
tapB
Cold-shock protein; Affects cell viability at low temperatures.
   
 
 0.502
capB
Cold-shock protein CapB; Affects cell viability at low temperatures.
   
 
 0.501
capA
DNA-binding protein; Affects cell viability at low temperatures.
   
 
 0.463
Your Current Organism:
Pseudomonas fragi
NCBI taxonomy Id: 296
Other names: ATCC 4973, Bacterium fragi, CCUG 556, CFBP 4556, CIP 55.4, DSM 3456, HAMBI 28, IFO 3458, LMG 2191, LMG:2191, NBRC 3458, NCCB 69033, NCIB 8542, NCIB:8542, NCTC 10689, NRRL B-25, NRRL B-727, NRRL:B:25, P. fragi, Pseudomonas fragariae, VKM B-898, VKM:B:898
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