STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdeAHdeA; Required for optimal acid stress protection. Exhibits a chaperone-like activity only at low pH by suppressing non-specifically the aggregation of denaturated periplasmic proteins. Belongs to the HdeA family. (104 aa)    
Predicted Functional Partners:
ARQ73388.1
GadC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.638
ARQ74839.1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
ARQ74129.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.518
ARQ75697.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.518
ARQ75932.1
Cold shock domain protein CspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.518
tapB
Cold-shock protein; Affects cell viability at low temperatures.
      
 0.487
capB
Cold-shock protein CapB; Affects cell viability at low temperatures.
      
 0.473
ARQ74837.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
B6D87_11675
Oxidoreductase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.445
capA
DNA-binding protein; Affects cell viability at low temperatures.
      
 0.435
Your Current Organism:
Pseudomonas fragi
NCBI taxonomy Id: 296
Other names: ATCC 4973, Bacterium fragi, CCUG 556, CFBP 4556, CIP 55.4, DSM 3456, HAMBI 28, IFO 3458, LMG 2191, LMG:2191, NBRC 3458, NCCB 69033, NCIB 8542, NCIB:8542, NCTC 10689, NRRL B-25, NRRL B-727, NRRL:B:25, P. fragi, Pseudomonas fragariae, VKM B-898, VKM:B:898
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