STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARQ75022.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)    
Predicted Functional Partners:
B6D87_14640
Fimbrial protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
ARQ75374.1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.710
ARQ75373.1
Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
ARQ74797.1
Cellulose biosynthesis protein BcsC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
ARQ73549.1
Iron-sulfur cluster scaffold-like protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.616
ARQ74180.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.601
ARQ75753.1
Histidine-type phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.600
ARQ74799.1
Cellulose synthase regulator BcsB; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
     0.597
ARQ76993.1
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.578
ARQ74349.1
DUF3313 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
Your Current Organism:
Pseudomonas fragi
NCBI taxonomy Id: 296
Other names: ATCC 4973, Bacterium fragi, CCUG 556, CFBP 4556, CIP 55.4, DSM 3456, HAMBI 28, IFO 3458, LMG 2191, LMG:2191, NBRC 3458, NCCB 69033, NCIB 8542, NCIB:8542, NCTC 10689, NRRL B-25, NRRL B-727, NRRL:B:25, P. fragi, Pseudomonas fragariae, VKM B-898, VKM:B:898
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.