STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARQ75854.1RDD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)    
Predicted Functional Partners:
ARQ73465.1
Cytochrome c1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
ARQ72792.1
Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
     0.659
ARQ73464.1
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
     0.645
ARQ76646.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HSP15 family.
  
    0.634
tapB
Cold-shock protein; Affects cell viability at low temperatures.
       0.554
ccmI
C-type cytochrome biogenesis protein CcmI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.515
ARQ73880.1
Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.490
ARQ74791.1
Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
ARQ72864.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
Your Current Organism:
Pseudomonas fragi
NCBI taxonomy Id: 296
Other names: ATCC 4973, Bacterium fragi, CCUG 556, CFBP 4556, CIP 55.4, DSM 3456, HAMBI 28, IFO 3458, LMG 2191, LMG:2191, NBRC 3458, NCCB 69033, NCIB 8542, NCIB:8542, NCTC 10689, NRRL B-25, NRRL B-727, NRRL:B:25, P. fragi, Pseudomonas fragariae, VKM B-898, VKM:B:898
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