STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARQ76478.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (933 aa)    
Predicted Functional Partners:
ARQ76479.1
Cytochrome-c peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.845
ARQ76477.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.752
ARQ76476.1
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.670
ARQ73331.1
Siderophore-interacting protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.637
ARQ76789.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.629
ARQ76788.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.623
ARQ73828.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.594
ARQ74342.1
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.592
ARQ76708.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.587
ARQ74383.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.586
Your Current Organism:
Pseudomonas fragi
NCBI taxonomy Id: 296
Other names: ATCC 4973, Bacterium fragi, CCUG 556, CFBP 4556, CIP 55.4, DSM 3456, HAMBI 28, IFO 3458, LMG 2191, LMG:2191, NBRC 3458, NCCB 69033, NCIB 8542, NCIB:8542, NCTC 10689, NRRL B-25, NRRL B-727, NRRL:B:25, P. fragi, Pseudomonas fragariae, VKM B-898, VKM:B:898
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.