STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARQ76717.1TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (692 aa)    
Predicted Functional Partners:
ARQ73414.1
PKHD-type hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.602
ARQ74253.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.602
ARQ74901.1
PKHD-type hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.592
ARQ73600.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.507
ARQ73047.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.477
ARQ74513.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.458
ARQ74105.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.455
ARQ74511.1
TonB-dependent siderophore receptor; Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.453
ARQ74524.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.450
ARQ76716.1
Protein-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
Your Current Organism:
Pseudomonas fragi
NCBI taxonomy Id: 296
Other names: ATCC 4973, Bacterium fragi, CCUG 556, CFBP 4556, CIP 55.4, DSM 3456, HAMBI 28, IFO 3458, LMG 2191, LMG:2191, NBRC 3458, NCCB 69033, NCIB 8542, NCIB:8542, NCTC 10689, NRRL B-25, NRRL B-727, NRRL:B:25, P. fragi, Pseudomonas fragariae, VKM B-898, VKM:B:898
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.