STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG76643.1Phenylacetic acid degradation b; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)    
Predicted Functional Partners:
KYG76644.1
phenylacetate-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
paaA
AAA family ATPase; With PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
KYG76645.1
phenylacetate-CoA oxygenase subunit PaaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.956
KYG76648.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.925
KYG76641.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.878
KYG79151.1
DUF4442 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.812
KYG75357.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.786
KYG80265.1
Phenylacetic acid degradation protein PaaN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.756
KYG83483.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.728
KYG78936.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.725
Your Current Organism:
Roseivirga echinicomitans
NCBI taxonomy Id: 296218
Other names: KCTC 12370, KMM 6058, LMG 22587, LMG:22587, R. echinicomitans, Roseivirga echinicomitans Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, marine bacterium KMM 6058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.