STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_91G00630ATP-dependent RNA helicase, mitochondrial (SUV3). (728 aa)    
Predicted Functional Partners:
ZOSMA_6G02160
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
   
 0.735
ZOSMA_67G00140
Exosome complex exonuclease exoribonuclease; Belongs to the RNR ribonuclease family.
   
 0.735
ZOSMA_28G00920
Ribonuclease II, chloroplastic/mitochondrial.
   
 0.735
A0A0K9P8E4
Exosome complex component RRP42.
   
 
  0.580
ZOSMA_8G00010
Sas10/Utp3/C1D family.
    
  0.564
A0A0K9PEV6
ATP-dependent RNA helicase, mitochondrial (SUV3).
  
  
 
0.564
A0A0K9NS57
Helicase ATP-binding domain-containing protein.
  
  
 
0.560
A0A0K9NPX9
Helicase C-terminal domain-containing protein.
  
  
 
0.558
A0A0K9NPR1
Uncharacterized protein.
  
  
 
0.556
A0A0K9PZT9
Helicase C-terminal domain-containing protein.
  
  
 
0.556
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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