ZOSMA_86G00320 protein (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZOSMA_86G00320

AA_kinase domain-containing protein. (315 aa)

Predicted Functional Partners:

A0A0K9PI39

0.989

ZOSMA_31G00960

0.985

ZOSMA_20G00170

0.948

A0A0K9PRA1

0.948

ZOSMA_56G00760

0.944

ZOSMA_6G01230

0.925

A0A0K9PST0

0.914

A0A0K9PCC1

0.904

ZOSMA_31G01450

0.900

A0A0K9PVK6

0.891

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9PCC1	ZOSMA_31G01450	A0A0K9PCC1	A0A0K9P988	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	Acetylglutamate kinase.	0.941
A0A0K9PCC1	ZOSMA_56G00760	A0A0K9PCC1	A0A0K9NY32	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.470
A0A0K9PCC1	ZOSMA_6G01230	A0A0K9PCC1	A0A0K9NT29	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	Argininosuccinate synthase.	0.445
A0A0K9PCC1	ZOSMA_86G00320	A0A0K9PCC1	A0A0K9NMU1	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	AA_kinase domain-containing protein.	0.904
A0A0K9PI39	A0A0K9PRA1	A0A0K9PI39	A0A0K9PRA1	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Argininosuccinate lyase.	0.985
A0A0K9PI39	A0A0K9PST0	A0A0K9PI39	A0A0K9PST0	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Ornithine aminotransferase.	0.956
A0A0K9PI39	A0A0K9PVK6	A0A0K9PI39	A0A0K9PVK6	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Acetylornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.986
A0A0K9PI39	ZOSMA_20G00170	A0A0K9PI39	A0A0K9PMT6	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Argininosuccinate lyase.	0.985
A0A0K9PI39	ZOSMA_31G00960	A0A0K9PI39	A0A0K9P8W5	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	N-acetyl-gamma-glutamyl-phosphate reductase.	0.999
A0A0K9PI39	ZOSMA_31G01450	A0A0K9PI39	A0A0K9P988	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Acetylglutamate kinase.	0.997
A0A0K9PI39	ZOSMA_56G00760	A0A0K9PI39	A0A0K9NY32	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.951
A0A0K9PI39	ZOSMA_6G01230	A0A0K9PI39	A0A0K9NT29	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Argininosuccinate synthase.	0.991
A0A0K9PI39	ZOSMA_86G00320	A0A0K9PI39	A0A0K9NMU1	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	AA_kinase domain-containing protein.	0.989
A0A0K9PRA1	A0A0K9PI39	A0A0K9PRA1	A0A0K9PI39	Argininosuccinate lyase.	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	0.985
A0A0K9PRA1	A0A0K9PST0	A0A0K9PRA1	A0A0K9PST0	Argininosuccinate lyase.	Ornithine aminotransferase.	0.948
A0A0K9PRA1	A0A0K9PVK6	A0A0K9PRA1	A0A0K9PVK6	Argininosuccinate lyase.	Acetylornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.930
A0A0K9PRA1	ZOSMA_31G00960	A0A0K9PRA1	A0A0K9P8W5	Argininosuccinate lyase.	N-acetyl-gamma-glutamyl-phosphate reductase.	0.978
A0A0K9PRA1	ZOSMA_31G01450	A0A0K9PRA1	A0A0K9P988	Argininosuccinate lyase.	Acetylglutamate kinase.	0.948
A0A0K9PRA1	ZOSMA_56G00760	A0A0K9PRA1	A0A0K9NY32	Argininosuccinate lyase.	Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.870
A0A0K9PRA1	ZOSMA_6G01230	A0A0K9PRA1	A0A0K9NT29	Argininosuccinate lyase.	Argininosuccinate synthase.	0.997