ZOSMA_76G00160 protein (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZOSMA_76G00160

Integral membrane family protein. (332 aa)

Predicted Functional Partners:

ZOSMA_43G00920

0.976

A0A0K9PV71

0.974

A0A0K9PHV2

0.967

A0A0K9PAF2

0.964

A0A0K9PNT3

0.964

ZOSMA_78G00660

0.954

ZOSMA_19G00080

0.954

A0A0K9P7A2

0.953

ZOSMA_5G01240

0.951

A0A0K9PNB0

0.951

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9P7A2	A0A0K9PAF2	A0A0K9P7A2	A0A0K9PAF2	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Uncharacterized protein.	0.864
A0A0K9P7A2	A0A0K9PHV2	A0A0K9P7A2	A0A0K9PHV2	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.898
A0A0K9P7A2	A0A0K9PNT3	A0A0K9P7A2	A0A0K9PNT3	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Ipi1_N domain-containing protein.	0.864
A0A0K9P7A2	ZOSMA_19G00080	A0A0K9P7A2	A0A0K9PN65	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Guanine nucleotide-binding protein-like 3.	0.993
A0A0K9P7A2	ZOSMA_43G00920	A0A0K9P7A2	A0A0K9P1H6	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.997
A0A0K9P7A2	ZOSMA_76G00160	A0A0K9P7A2	A0A0K9NR48	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Integral membrane family protein.	0.953
A0A0K9P7A2	ZOSMA_78G00660	A0A0K9P7A2	A0A0K9NQP7	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Ribosome biogenesis GTPase A.	0.993
A0A0K9PAF2	A0A0K9P7A2	A0A0K9PAF2	A0A0K9P7A2	Uncharacterized protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.864
A0A0K9PAF2	A0A0K9PHV2	A0A0K9PAF2	A0A0K9PHV2	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.833
A0A0K9PAF2	A0A0K9PNB0	A0A0K9PAF2	A0A0K9PNB0	Uncharacterized protein.	Polynucleotide 5'-hydroxyl-kinase grc3.	0.890
A0A0K9PAF2	ZOSMA_19G00080	A0A0K9PAF2	A0A0K9PN65	Uncharacterized protein.	Guanine nucleotide-binding protein-like 3.	0.941
A0A0K9PAF2	ZOSMA_43G00920	A0A0K9PAF2	A0A0K9P1H6	Uncharacterized protein.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.978
A0A0K9PAF2	ZOSMA_5G01240	A0A0K9PAF2	A0A0K9NU07	Uncharacterized protein.	Polynucleotide 5'-hydroxyl-kinase grc3.	0.890
A0A0K9PAF2	ZOSMA_76G00160	A0A0K9PAF2	A0A0K9NR48	Uncharacterized protein.	Integral membrane family protein.	0.964
A0A0K9PAF2	ZOSMA_78G00660	A0A0K9PAF2	A0A0K9NQP7	Uncharacterized protein.	Ribosome biogenesis GTPase A.	0.941
A0A0K9PHV2	A0A0K9P7A2	A0A0K9PHV2	A0A0K9P7A2	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.898
A0A0K9PHV2	A0A0K9PAF2	A0A0K9PHV2	A0A0K9PAF2	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Uncharacterized protein.	0.833
A0A0K9PHV2	A0A0K9PNB0	A0A0K9PHV2	A0A0K9PNB0	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Polynucleotide 5'-hydroxyl-kinase grc3.	0.838
A0A0K9PHV2	A0A0K9PNT3	A0A0K9PHV2	A0A0K9PNT3	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Ipi1_N domain-containing protein.	0.833
A0A0K9PHV2	ZOSMA_19G00080	A0A0K9PHV2	A0A0K9PN65	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Guanine nucleotide-binding protein-like 3.	0.998