ZOSMA_60G00300 protein (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZOSMA_60G00300

26S protease regulatory subunit 7. (1222 aa)

Predicted Functional Partners:

A0A0K9PG08

0.928

A0A0K9PHP5

0.928

ZOSMA_1G02900

0.923

ZOSMA_17G00470

0.913

A0A0K9Q262

0.913

ZOSMA_49G00360

0.912

A0A0K9PEF2

0.911

ZOSMA_1G02890

0.908

ZOSMA_48G00560

0.899

ZOSMA_74G00040

0.895

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9PEF2	A0A0K9PHP5	A0A0K9PEF2	A0A0K9PHP5	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome non-ATPase regulatory subunit.	0.999
A0A0K9PEF2	A0A0K9Q262	A0A0K9PEF2	A0A0K9Q262	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome non-ATPase regulatory subunit.	0.999
A0A0K9PEF2	ZOSMA_17G00470	A0A0K9PEF2	A0A0K9PTB7	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome non-ATPase regulatory subunit.	0.999
A0A0K9PEF2	ZOSMA_1G02890	A0A0K9PEF2	A0A0K9PMX6	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome regulatory subunit N9.	0.999
A0A0K9PEF2	ZOSMA_1G02900	A0A0K9PEF2	A0A0K9PPZ5	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Putative 26S proteasome non-atpase regulatory subunit.	0.999
A0A0K9PEF2	ZOSMA_48G00560	A0A0K9PEF2	A0A0K9NZB2	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
A0A0K9PEF2	ZOSMA_49G00360	A0A0K9PEF2	A0A0K9P155	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Putative 26S proteasome regulatory subunit S3.	0.999
A0A0K9PEF2	ZOSMA_60G00300	A0A0K9PEF2	A0A0K9NTH0	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S protease regulatory subunit 7.	0.911
A0A0K9PEF2	ZOSMA_74G00040	A0A0K9PEF2	A0A0K9NPY9	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.997
A0A0K9PG08	ZOSMA_60G00300	A0A0K9PG08	A0A0K9NTH0	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	26S protease regulatory subunit 7.	0.928
A0A0K9PHP5	A0A0K9PEF2	A0A0K9PHP5	A0A0K9PEF2	26S proteasome non-ATPase regulatory subunit.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
A0A0K9PHP5	A0A0K9Q262	A0A0K9PHP5	A0A0K9Q262	26S proteasome non-ATPase regulatory subunit.	26S proteasome non-ATPase regulatory subunit.	0.999
A0A0K9PHP5	ZOSMA_17G00470	A0A0K9PHP5	A0A0K9PTB7	26S proteasome non-ATPase regulatory subunit.	26S proteasome non-ATPase regulatory subunit.	0.999
A0A0K9PHP5	ZOSMA_1G02890	A0A0K9PHP5	A0A0K9PMX6	26S proteasome non-ATPase regulatory subunit.	26S proteasome regulatory subunit N9.	0.999
A0A0K9PHP5	ZOSMA_1G02900	A0A0K9PHP5	A0A0K9PPZ5	26S proteasome non-ATPase regulatory subunit.	Putative 26S proteasome non-atpase regulatory subunit.	0.999
A0A0K9PHP5	ZOSMA_48G00560	A0A0K9PHP5	A0A0K9NZB2	26S proteasome non-ATPase regulatory subunit.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
A0A0K9PHP5	ZOSMA_49G00360	A0A0K9PHP5	A0A0K9P155	26S proteasome non-ATPase regulatory subunit.	Putative 26S proteasome regulatory subunit S3.	0.999
A0A0K9PHP5	ZOSMA_60G00300	A0A0K9PHP5	A0A0K9NTH0	26S proteasome non-ATPase regulatory subunit.	26S protease regulatory subunit 7.	0.928
A0A0K9PHP5	ZOSMA_74G00040	A0A0K9PHP5	A0A0K9NPY9	26S proteasome non-ATPase regulatory subunit.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.998
A0A0K9Q262	A0A0K9PEF2	A0A0K9Q262	A0A0K9PEF2	26S proteasome non-ATPase regulatory subunit.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999