STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_67G00230C3HC-type domain-containing protein. (651 aa)    
Predicted Functional Partners:
ZOSMA_26G00270
SKP1-like protein 21; Belongs to the SKP1 family.
    
  0.596
A0A0K9PHU7
Uncharacterized protein.
    
  0.596
A0A0K9PK60
Skp1 domain-containing protein; Belongs to the SKP1 family.
    
  0.596
ZOSMA_1G03140
SKP1-like protein 11.
    
  0.596
ZOSMA_40G00670
RING-box protein.
    
 0.532
ZOSMA_40G00680
RING-box protein 1a.
    
 0.532
ZOSMA_31G01060
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
      
 0.470
ZOSMA_74G00480
Putative Cullin-1; Belongs to the cullin family.
    
  0.419
A0A0K9P7F5
Cullin-3B; Belongs to the cullin family.
    
  0.419
ZOSMA_28G00730
Cullin domain-containing protein; Belongs to the cullin family.
    
  0.419
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.