STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_65G00340(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB. (617 aa)    
Predicted Functional Partners:
ZOSMA_20G00540
Exosome complex exonuclease RRP40.
    
 
 0.834
ZOSMA_84G00180
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.736
ZOSMA_2G00400
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.736
ZOSMA_44G00510
Ribosomal RNA small subunit methyltransferase E.
  
  
 0.516
ZOSMA_55G00350
tRNA-specific 2-thiouridylase mnmA.
  
  
 0.480
ZOSMA_88G00510
Putative RNA methyltransferase.
  
  
 0.429
ZOSMA_81G00090
Iron-sulfur cluster insertion protein ErpA.
  
  
 0.429
ZOSMA_69G00040
Chorismate synthase.
  
  
 0.429
ZOSMA_5G02630
Putative Peptide chain release factor.
  
  
 0.429
A0A0K9P989
Putative Peptide chain release factor.
  
  
 0.429
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.