STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_66G00350DnaJ domain containing protein, expressed. (260 aa)    
Predicted Functional Partners:
ZOSMA_64G00720
Putative Splicing factor 3A subunit.
    
   0.778
ZOSMA_48G00850
Uncharacterized protein.
   
  0.633
A0A0K9PP41
Nuclear inhibitor of protein phosphatase.
   
 
 0.623
ZOSMA_19G00520
Serrate RNA effector molecule.
   
 
  0.609
A0A0K9PPU0
Cwf21 domain-containing protein.
    
  0.572
A0A0K9PLD3
Uncharacterized protein.
   
 
  0.563
ZOSMA_44G01210
RNA-binding protein 39.
   
  0.553
ZOSMA_56G00600
Protoheme IX farnesyltransferase.
 
      0.425
ZOSMA_27G00140
Signal recognition particle 14 kDa family protein.
   
   0.405
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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