STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_56G00850Pectinesterase. (543 aa)    
Predicted Functional Partners:
A0A0K9Q1V2
Pectate lyase.
  
 
 0.772
A0A0K9NZ13
Pectate lyase.
   
 
 0.705
A0A0K9PXE4
Polygalacturonase, family GH28; Belongs to the glycosyl hydrolase 28 family.
     
 0.703
ZOSMA_41G00870
Pectate lyase.
  
 
  0.675
ZOSMA_43G00690
Pectate lyase.
  
 
  0.650
ZOSMA_14G00920
Polygalacturonase, family GH28.
     
 0.605
A0A0K9P3A2
ASF1 like histone chaperone.
    
 0.569
ZOSMA_56G00360
Uncharacterized protein.
    
  0.540
ZOSMA_99G00880
Pectate lyase.
  
 
  0.523
ZOSMA_97G00770
Pectate lyase.
   
 
  0.522
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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