STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_4G01820Ubiquitin thioesterase otubain-like. (332 aa)    
Predicted Functional Partners:
A0A0K9PTP2
Ubiquitin-60S ribosomal protein L40.
    
   0.932
A0A0K9Q4C8
Ubiquitin-60S ribosomal protein L40.
    
   0.932
A0A0K9P2H9
Ubiquitin-40S ribosomal protein S27a-1.
   
 
 0.924
ZOSMA_24G01040
Ubiquitin-40S ribosomal protein S27a.
   
 
 0.924
ZOSMA_53G00060
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.892
A0A0K9P1H7
Putative Vacuolar protein sorting protein.
    
 0.892
ZOSMA_38G00080
Ubiquitin-conjugating enzyme E2 16; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.892
ZOSMA_38G00510
Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.892
A0A0K9PA21
Putative Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.892
A0A0K9PK38
Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.892
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.