STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9NZC5Uncharacterized protein. (244 aa)    
Predicted Functional Partners:
ZOSMA_49G00310
Ubiquitin-protein ligase 4.
   
 
 0.762
A0A0K9PX68
Ubiquitin-protein ligase 4.
   
 
 0.762
ZOSMA_88G00290
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.657
A0A0K9PEF2
26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 
 0.533
A0A0K9NXB7
E3 ubiquitin-protein ligase listerin.
   
 0.500
A0A0K9P5J3
ThiF domain-containing protein.
   
 
  0.497
A0A0K9PLZ1
NEDD8-activating enzyme E1 catalytic subunit.
   
 
  0.497
A0A0K9PCZ8
Ubiquitin conjugation factor E4.
   
 
 0.496
ZOSMA_76G00550
Polyubiquitin.
   
  0.484
A0A0K9P544
Ubiquitin-NEDD8-like protein RUB1.
   
  0.484
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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