STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9P168WD_REPEATS_REGION domain-containing protein. (432 aa)    
Predicted Functional Partners:
ZOSMA_10G00370
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.989
ZOSMA_46G00340
Putative Pre-mRNA-splicing factor syf2.
    
 0.988
ZOSMA_6G01130
Pre-mRNA-splicing factor cwc25.
    
 0.987
A0A0K9PPU0
Cwf21 domain-containing protein.
   
 0.986
ZOSMA_30G00030
CWF19-like 2, cell cycle control.
   
 0.983
A0A0K9PZK7
Pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.983
ZOSMA_5G01670
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.980
ZOSMA_4G01410
Coiled-coil domain containing 12.
    
  0.979
ZOSMA_2G01400
Nuclear cap-binding protein subunit.
   
  0.974
A0A0K9PUF6
Pre-mRNA splicing factor.
   
 
 0.968
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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