STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_42G00250Uncharacterized protein. (617 aa)    
Predicted Functional Partners:
A0A0K9P0E7
Uncharacterized protein.
 
   
  0.872
ZOSMA_16G00830
DNA polymerase delta subunit 2.
    
 0.865
A0A0K9PX56
DNA polymerase.
   
 0.780
A0A0K9PQQ4
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.761
ZOSMA_75G00760
ERCC4 domain-containing protein.
    
 0.733
A0A0K9PKB1
NADH dehydrogenase 1 alpha subcomplex subunit 8.
   
   0.724
A0A0K9PM88
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B.
    
   0.714
ZOSMA_76G00780
Small nuclear ribonucleoprotein G.
    
  0.704
ZOSMA_66G00660
NADH-ubiquinone oxidoreductase subunit; Belongs to the complex I 75 kDa subunit family.
    
   0.690
ZOSMA_19G00160
NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed.
   
   0.676
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.