STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9P269Helicase ATP-binding domain-containing protein. (191 aa)    
Predicted Functional Partners:
A0A0K9Q1E2
Putative Pentatricopeptide repeat-containing protein.
    
 0.976
A0A0K9P4N3
HELICc2 domain-containing protein.
 
     0.949
ZOSMA_69G00650
General transcription factor IIH subunit.
    
 0.941
ZOSMA_25G00160
General transcription factor IIH subunit.
    
 0.941
ZOSMA_15G01640
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.941
A0A0K9PYY4
Putative RNA polymerase II transcription factor B subunit.
    
 0.941
ZOSMA_8G00430
Cyclin-dependent kinase D-1; Belongs to the protein kinase superfamily.
    
 0.940
ZOSMA_96G00360
Cyclin-H; Belongs to the cyclin family.
    
 0.940
A0A0K9PRV1
TATA-box binding protein.
   
 0.922
ZOSMA_23G00340
Putative Transcription initiation factor IIF subunit beta.
    
 0.920
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
Server load: low (18%) [HD]