STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9P486tRNA-splicing endonuclease. (1324 aa)    
Predicted Functional Partners:
ZOSMA_91G00060
RRM domain-containing protein.
   
 
 0.893
ZOSMA_88G00600
Nonsense-mediated mRNA decay 2 protein.
   
  0.698
A0A0K9PX80
Sister chromatid cohesion protein.
   
    0.653
ZOSMA_22G00290
Uncharacterized protein.
    
 0.530
A0A0K9PRK9
Regulator of nonsense transcripts-like protein.
    
0.530
EIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
      
 0.474
ZOSMA_29G00080
Nuclear cap-binding protein subunit 2.
    
 
 0.464
ZOSMA_76G00430
Tyrosine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
  0.461
ZOSMA_40G00560
Glycos_transf_1 domain-containing protein.
  
     0.458
ZOSMA_4G01060
Major facilitator protein.
   
 
  0.448
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.