STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_40G00680RING-box protein 1a. (121 aa)    
Predicted Functional Partners:
ZOSMA_14G01640
Transcription elongation factor B polypeptide 2.
   
 0.987
A0A0K9PW72
Putative Transcription elongation factor B polypeptide; Belongs to the SKP1 family.
   
 0.985
A0A0K9PCA9
E3 ubiquitin-protein ligase PRT1.
    
 0.983
ZOSMA_49G00550
Putative Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.976
A0A0K9PR77
Cullin 4; Belongs to the cullin family.
    
 0.976
ZOSMA_10G01490
COP9 signalosome complex subunit 5b.
   
 0.958
ZOSMA_82G00940
DNA damage-binding protein 1.
    
 0.954
ZOSMA_4G00240
Uncharacterized protein.
    
 0.954
ZOSMA_6G00140
COP9 signalosome complex subunit 2.
    
 0.947
A0A0K9PK60
Skp1 domain-containing protein; Belongs to the SKP1 family.
   
 0.946
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.