STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_37G01310Pectate lyase. (275 aa)    
Predicted Functional Partners:
A0A0K9PXE4
Polygalacturonase, family GH28; Belongs to the glycosyl hydrolase 28 family.
     
 0.828
A0A0K9NV82
Polygalacturonase, family GH28.
     
 0.826
ZOSMA_14G00920
Polygalacturonase, family GH28.
     
 0.821
ZOSMA_52G00610
Polygalacturonase, family GH28.
     
 0.814
ZOSMA_22G01250
Pectinesterase.
    
  0.803
A0A0K9PXD9
Polygalacturonase, family GH28.
     
 0.802
ZOSMA_12G00740
Pectinesterase.
   
 
 0.799
A0A0K9PLP9
Pectinesterase.
     
 0.790
ZOSMA_7G00640
Pectinesterase.
   
 
  0.786
ZOSMA_72G00550
Pectinesterase.
   
 
  0.786
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.