STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_36G00220AAA domain-containing protein; Belongs to the AAA ATPase family. (468 aa)    
Predicted Functional Partners:
ZOSMA_1G00610
Uncharacterized protein.
 
  0.936
A0A0K9P3J9
Putative UBX domain-containing protein.
   
 0.908
A0A0K9PTP7
NPL4-like protein.
    
 0.896
ZOSMA_24G01530
ATP-dependent RNA helicase DOB1.
   
 0.881
A0A0K9PZL4
ATP-dependent RNA helicase DOB1.
   
 0.881
ZOSMA_60G00560
Putative RNA-binding protein.
   
  
 0.858
ZOSMA_53G00800
ATP dependent RNA helicase.
   
   0.846
A0A0K9Q4H5
MI domain-containing protein.
   
    0.836
ZOSMA_27G01180
Putative Nucleolar complex-associated protein.
   
  
 0.815
A0A0K9PHV2
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.798
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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