STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_36G00530Protein farnesyltransferase/geranylgeranyltransferase type-1subunit alpha. (331 aa)    
Predicted Functional Partners:
A0A0K9PVL9
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
    
 0.999
A0A0K9PZK9
Putative Geranylgeranyl transferase type I beta subunit.
    
 0.998
ZOSMA_66G00220
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.915
ZOSMA_27G01020
CAAX prenyl protease 2.
     
 0.909
A0A0K9PR53
Uncharacterized protein.
     
 0.909
ZOSMA_29G00710
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.902
A0A0K9PEZ4
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.901
A0A0K9Q553
Uncharacterized protein.
     
 0.901
ZOSMA_8G01150
Squalene synthase.
     
 0.897
ZOSMA_16G00900
Phytoene synthase.
     
 0.897
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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