STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_33G00770UBIQUITIN_CONJUGAT_2 domain-containing protein. (635 aa)    
Predicted Functional Partners:
ZOSMA_49G00310
Ubiquitin-protein ligase 4.
   
 0.914
A0A0K9PX68
Ubiquitin-protein ligase 4.
   
 0.914
A0A0K9PCZ8
Ubiquitin conjugation factor E4.
   
 0.906
A0A0K9P7A4
Uncharacterized protein.
    
 0.904
A0A0K9PV95
Ubiquitin-activating enzyme E1 2; Belongs to the ubiquitin-activating E1 family.
 
 0.867
ZOSMA_62G00050
E3 ubiquitin-protein ligase KEG.
    
 0.858
A0A0K9NY80
Putative ubiquitin-conjugating enzyme E2 24.
  
  
 
0.850
ZOSMA_88G00290
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.832
ZOSMA_41G00600
Putative ubiquitin-conjugating enzyme E2 23.
  
  
 
0.828
ZOSMA_42G00610
Small ubiquitin-related modifier.
   
 0.820
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.