STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_30G01140WD repeat-containing protein. (790 aa)    
Predicted Functional Partners:
ZOSMA_79G00440
Putative Something about silencing protein sas10.
   
 0.999
ZOSMA_74G01030
Putative WD-repeat protein.
   
 0.999
ZOSMA_72G00110
Transducin/WD40 repeat-like superfamily protein.
   
 0.999
ZOSMA_74G00180
Putative U3 small nucleolar RNA-associated protein.
   
 0.999
ZOSMA_30G00910
Putative U3 small nucleolar ribonucleoprotein imp4.
   
  0.999
ZOSMA_29G00060
Putative U3 small nucleolar RNA-interacting protein.
   
 0.999
ZOSMA_27G00810
U3 small nucleolar RNA-associated protein-like protein.
   
 0.999
ZOSMA_27G00130
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
ZOSMA_22G01160
Uncharacterized protein.
   
 0.999
A0A0K9PQC5
Putative U3 small nucleolar RNA-associated protein.
   
 0.999
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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