ZOSMA_2G01000 protein (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZOSMA_2G01000

Uncharacterized protein. (366 aa)

Predicted Functional Partners:

A0A0K9P7A2

0.982

ZOSMA_41G00040

0.979

ZOSMA_14G00890

0.974

ZOSMA_43G00920

0.967

ZOSMA_2G00870

0.961

ZOSMA_1G01210

0.956

ZOSMA_67G00330

0.945

A0A0K9PZF4

0.945

ZOSMA_3G00420

0.944

A0A0K9PX93

0.944

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9P7A2	A0A0K9PX93	A0A0K9P7A2	A0A0K9PX93	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.906
A0A0K9P7A2	A0A0K9PZF4	A0A0K9P7A2	A0A0K9PZF4	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.993
A0A0K9P7A2	ZOSMA_14G00890	A0A0K9P7A2	A0A0K9PYL5	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Brix domain-containing protein 1.	0.994
A0A0K9P7A2	ZOSMA_1G01210	A0A0K9P7A2	A0A0K9PM70	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.996
A0A0K9P7A2	ZOSMA_2G00870	A0A0K9P7A2	A0A0K9PCY7	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Putative 60S ribosomal protein L24.	0.988
A0A0K9P7A2	ZOSMA_2G01000	A0A0K9P7A2	A0A0K9PAH4	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Uncharacterized protein.	0.982
A0A0K9P7A2	ZOSMA_3G00420	A0A0K9P7A2	A0A0K9P5V4	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Ribosomal RNA large subunit methyltransferase E.	0.906
A0A0K9P7A2	ZOSMA_41G00040	A0A0K9P7A2	A0A0K9P4M3	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	RRM domain-containing protein.	0.992
A0A0K9P7A2	ZOSMA_43G00920	A0A0K9P7A2	A0A0K9P1H6	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.997
A0A0K9P7A2	ZOSMA_67G00330	A0A0K9P7A2	A0A0K9NUA9	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	GTPase obg.	0.993
A0A0K9PX93	A0A0K9P7A2	A0A0K9PX93	A0A0K9P7A2	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.906
A0A0K9PX93	A0A0K9PZF4	A0A0K9PX93	A0A0K9PZF4	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.968
A0A0K9PX93	ZOSMA_14G00890	A0A0K9PX93	A0A0K9PYL5	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Brix domain-containing protein 1.	0.978
A0A0K9PX93	ZOSMA_1G01210	A0A0K9PX93	A0A0K9PM70	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.994
A0A0K9PX93	ZOSMA_2G00870	A0A0K9PX93	A0A0K9PCY7	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Putative 60S ribosomal protein L24.	0.991
A0A0K9PX93	ZOSMA_2G01000	A0A0K9PX93	A0A0K9PAH4	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.944
A0A0K9PX93	ZOSMA_41G00040	A0A0K9PX93	A0A0K9P4M3	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	RRM domain-containing protein.	0.990
A0A0K9PX93	ZOSMA_43G00920	A0A0K9PX93	A0A0K9P1H6	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.968
A0A0K9PX93	ZOSMA_67G00330	A0A0K9PX93	A0A0K9NUA9	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	GTPase obg.	0.968
A0A0K9PZF4	A0A0K9P7A2	A0A0K9PZF4	A0A0K9P7A2	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.993